Hi,
I cannot submit my data. Looking at log file it thinks my patientidmapping.csv is missing but I checked and it is definitely there.
STDERR: 2024-08-29T23:42:19.186174774Z 2024-08-29 23:42:07,556 - [INFO] - Reports Generation Complete - Duration: (2, 25)
STDERR: 2024-08-29T23:42:19.186178348Z {
STDERR: 2024-08-29T23:42:19.186182190Z "config_file": {
STDERR: 2024-08-29T23:42:19.186187112Z "run_name": "MIDI_1_1_Testing",
STDERR: 2024-08-29T23:42:19.186193336Z "input_data_path": "submission/mappings",
STDERR: 2024-08-29T23:42:19.186203705Z "output_data_path": "results",
STDERR: 2024-08-29T23:42:19.186210032Z "answer_db_file": "/usr/local/bin/MIDI_validation_script/midi_1_1_answer_data_1.db",
STDERR: 2024-08-29T23:42:19.186216460Z "uid_mapping_file": "submission/mappings/uid_mapping.csv",
STDERR: 2024-08-29T23:42:19.186223043Z "patid_mapping_file": null,
STDERR: 2024-08-29T23:42:19.186228854Z "multiprocessing": "True",
STDERR: 2024-08-29T23:42:19.186233825Z "multiprocessing_cpus": "5",
STDERR: 2024-08-29T23:42:19.186237564Z "log_path": "logs",
STDERR: 2024-08-29T23:42:19.186241164Z "log_level": "info",
STDERR: 2024-08-29T23:42:19.186244820Z "report_series": "True"
STDERR: 2024-08-29T23:42:19.186248572Z }
STDERR: 2024-08-29T23:42:19.186251960Z }
I am just trying to rename the field mappings from id_old and id_new (in example) to idold and idnew (in the text). Also file is getting to 100% and stopping.
Regards,
Chris
Created by Chris Ablett ChrisAb Hi,
You can close this thread. patient_id_mapping.csv fixed the issue.
Regards,
Chris Hello Again,
I am now trying renaming the file from patientidmapping.csv to patient_id_mapping.csv
I will let you know how I get on.
Regards,
Chris
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