Hi, when I download RNA-seq fastq files via command using synapse, some files fail to download with errors. With it, I cannot even get the metadata.tsv. For example, when I used this command " synapse get -r syn21589959 ", or "synapse get -r syn2580853", it was happened. I could not download about 100 samples, for example, "RISK_184_rerun_S128_R1_001.fastq.gz" "RISK_184_rerun_S128_R2_001.fastq.gz" "RISK_187_rerun_S129_R1_001.fastq.gz" "RISK_188_rerun_S130_R1_001.fastq.gz" "RISK_188_rerun_S130_R2_001.fastq.gz" "RISK_189_rerun_S131_R2_001.fastq.gz" "RISK_207_redo_S44_R2_001.fastq.gz" "RISK_227_redo_S56_R2_001.fastq.gz" "RISK_229_redo_S64_R2_001.fastq.gz" and, error massage was that SynapseHTTPError: 400 Client Error: Batch must contain at least one item Are there any restrictions, such as files over 5 GB cannot be downloaded from S3 using the API? Best, Misato

Created by Misato Kaishima K-Misato
I apologize for the inconvenience. Would you please submit the issue here? https://sagebionetworks.jira.com/servicedesk/customer/portal/9

Some RNA-seq fastq files fail to download via API. page is loading…