Hi,
I am running the following command, but when I check on the website, clicking on a BAM file link, it does not show the "http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.13.Linux_x86_64.tar.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/hg19.2bit"
This information does show for the rest of the files I uploaded
Below is an example of the command I used to set it for the last batch of files I uploaded
synapse set-provenance --id syn7058652 --used http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.13.Linux_x86_64.tar.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/hg19.2bit --executed syn3527978
What am I doing wrong ?
Thanks
Created by Gianfilippo Coppola gianfilippo.coppola Hi @gianfilippo.coppola. Did this work? And here's the plot I see:
${provenance?entityList=syn7058652&depth=1&showExpand=false} Hi Gianfilippo,
When I look at the id you mention above, I see all 3 items in the provenance record. Is that what you are expecting to see?
```
synapse get-provenance --id syn7058652
{
"createdBy": "3323922",
"createdOn": "2016-08-02T21:47:14.168Z",
"etag": "7d285dec-b478-4f5c-b452-bb8946a21246",
"id": "7112643",
"modifiedBy": "3323922",
"modifiedOn": "2016-08-02T21:47:14.168Z",
"used": [
{
"concreteType": "org.sagebionetworks.repo.model.provenance.UsedEntity",
"reference": {
"targetId": "syn3527978",
"targetVersionNumber": 2
},
"wasExecuted": true
},
{
"concreteType": "org.sagebionetworks.repo.model.provenance.UsedURL",
"name": "http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/hg19.2bit",
"url": "http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/hg19.2bit",
"wasExecuted": false
},
{
"concreteType": "org.sagebionetworks.repo.model.provenance.UsedURL",
"name": "http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.13.Linux_x86_64.tar.gz",
"url": "http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.13.Linux_x86_64.tar.gz",
"wasExecuted": false
}
]
}
```
Drop files to upload
unable to see BAM files provenance on webpage after setting it by command line page is loading…