Dear challenge organizers,
I'm trying to test and run the PASCAL which is referenced for the evaluation tool.
When getting the pathway score in which the pathway information should be provided as gmt file, is there a restriction of gene id in the gmt file? For example, should it be written as entrez id?
Thank you.
SungJoonPark
Created by Sungjoon Park Sungjoon Thank you for the reply.
SungJoonPark PASCAL uses entrez_id but the genes in the provided networks are anonymized i.e the ids are random numbers not the actual ids.