Hello, I would like to ask something about FISH dataset. Is it correct to see : Study_Visit_ID : MMRF_1020_3_BM --> study_name, patient_id, visit_number Is SeqExome_Cp_11p15 a z-score or something? What are the meanings of SeqExome_Cp_11p15_20percent and SeqExome_Cp_11p15_50percent? (They are binary) Thanks, Best regards.

Created by Daehan Kim dmis_peter
Dear Deahan, That file is from the MMRF's research gateway that we include for convenience. The clinical annotations files have the cytogenetic custom calls that will be available for the validation sets and we recommend using them for modeling. If you still want to understand the fish file you can go to the [MMRF Research Gateway](https://research.themmrf.org), register, and go into the downloads section where they have file descriptions and pipeline write-ups. I'll also be forwarding this thread to one of our collaborators who is especially knowledgeable with regards to cytogenetics assays. Kind Regards, Mike

meaning of row & column in mmrf_commpass_ia9b_cna_exome_fish_cn_all_specimens.txt page is loading…