Hello,
We have been trying to submit our model for some time now and we have recently come across a string of errors involving finding the validation data. We are importing the validation data from `dir_test_data = '/test-data/'` in our python script. When we submit this to express lane, we get the following error (depending on the file we try to import first): `FileNotFoundError: File b'/test-data/dfci.2009_entrezID_TPM_hg19.csv' does not exist`.
Could you help with this issue?
Nat
Created by Nathaniel Hawkins nathawkins Dear Nat,
Glad it worked!
Best,
Tom Tom,
We actually just got this working. The files were not importing before. We took your suggestion and used the filenames from `/test-data/sc2_Validation_ClinAnnotations.csv`. Thank you for the help.
Have a good one,
Nat Dear Nat,
Thanks for your participation. It looks like you have submitted a scored submission to the express lanes. Do you have a particular submission Id you would like me to look up? Filenames between the express lane and the main challenge queues are different.
Best,
Tom Hi Tom,
Unfortunately, the error persists. Anytime we try submitting our model, we get the same type of error: `FileNotFoundError: File b'/test-data/GSE15695entrezIDlevel.csv' does not exist`.
Any idea what's going on here?
Nat Dear Nat,
Apologies for the delay in response. The filename changed to `dfci.2009_entrezID_TPM_hg19_LBR1.csv`. However to ensure that you are getting the correct filenames, we urge you to read in `/test-data/sc2_Validation_ClinAnnotations.csv` and under the column `RNASeq_geneLevelExpFile` will always contain the most up to date filenames per study.
Thanks,
Tom