I am using python 3.6 for developing my codes and pyVCF as VCF reader and scikit for machine learning, but I am not able to install it using apt-get commands in Dockerfile. Can anybody guide me how to
install them in Docker environment.
Created by sherry bhalla sherry_bhalla It worked.
Thanks Luethy. I am able to use pyVCF and sklearn. I am using pip3 to install them. Below is my Docker file.
Hope that helps:
Dockerfile:
```
FROM ubuntu:16.10
# Install binary dependencies
RUN apt-get -qqy update && \
apt-get install -qqy software-properties-common --no-install-recommends && \
apt-get install -qqy \
build-essential \
g++ \
libopenblas-dev \
python3 \
python3-setuptools \
python3-dev \
python3-pip \
python3-tk \
git-all \
--no-install-recommends
RUN pip3 install wheel && \
pip3 install matplotlib && \
pip3 install pandas && \
pip3 install sklearn && \
pip3 install xgboost && \
pip3 install pysam && \
pip3 install pyvcf
COPY regressors.py /regressors.py
COPY logger.py /logger.py
COPY score_sc1.sh /score_sc1.sh
COPY training /training
```
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