Dear all, I saw that the RNASeq_transLevelExpFile field contains the filename which holds the actual count data for that sample. Many samples map to the same file. My question: will all samples map to the same file in the testdata set for sc3 or will there be batches of samples mapping to different files? Just asking to take this into account in advance. Cheers, Charles

Created by Charles Imbusch imbusch
Dear Charles, I think it is best to think of it as batches. There is one expression file for each study. So there will be one for DFCI samples and one for M2Gen. It is similar the expression data file set up for Challenge question 2. Please note that they are TPMs not "counts" but suspect you were just referring to RNA-seq generally when you say count data. I am not sure I answered your question....

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