Hi, First of all, I am not very well famliarized with this type of clinical data, so this might be a naive question. My question is about the pathology_report_level_dataset file regarding the CBP CRC project. I saw that for a single "Surgical pathology" event there might be more than one specimen in the Pathology report (in the column "path_num_spec"). Moreover, these specimens might come from different Anatomic sites (according to the path_site_x columns). However, for those cases in which Sample Aquisition took place, there is only one sample that went through sequencing (if I understood it correctly). So, is there a way to know from which anatomic site did the sample that went through sequencing came from? A similar question came up when lloking at the pathological tests in the same file (e.g MMR and MSI tests). Is there a way to know from which anatomic site did the sample that went through these pathological tests (e.g MMR and MSI tests) came from? Basically, I am interested to know if the sequenced data comes from the exact same sample that went through MSI or MMR test. Thank you very much in advance. Best, Diego.

Created by Diego García López diegogl

How can I know which was the pathological specimen sequenced/tested? page is loading…