Synodos_mouseSchwannoma_RNASeq_diffExp_genes.tsv

syn7437782

Created By Abhishek Pratap apratap

assay: rnaSeq
species: Mouse
cellType: schwann
dataType: geneExpression
diagnosis: Neurofibromatosis 2
tumorType: Schwannoma
consortium: Synodos
fileFormat: tsv
isCellLine: TRUE
isStranded: TRUE
specimenID: MS03,MS12
dataSubtype: dataMatrix
nf1Genotype: unknown
nf2Genotype: +/+,-/-
analysisType: differentialExpression
compoundDose: 100.0
compoundName: DMSO,Fimepinostat,Panobinostat,Omipalisib
individualID: MS03,MS12
resourceType: analysis
fundingAgency: CTF
genePerturbed: NF2
structureType: SMILES
timePointUnit: hours
alignmentMethod: GSNAP
isMultiSpecimen: TRUE
compoundDoseUnit: nM
specimenIdSource: MGH
chemicalStructure: CS(=O)C,CN(Cc1cc2c(s1)c(nc(n2)c3ccc(nc3)OC)N4CCOCC4)c5ncc(cn5)C(=O)NO,Cc1c(c2ccccc2[nH]1)CCNCc3ccc(cc3)/C=C/C(=O)NO,COc1c(cc(cn1)c2ccc3c(c2)c(ccn3)c4ccnnc4)NS(=O)(=O)c5ccc(cc5F)F
isMultiIndividual: TRUE
individualIdSource: Sage Bionetworks
genePerturbationType: knockout
cellLineMetadataSynId: syn3275123
experimentalCondition: DMSO,100 nM CUDC-907,100 nM Panobinostat,100 nM GSK2126458
experimentalTimePoint: 24
specimenMetadataSynId: syn5569975
genePerturbationTechnology: CRE Recombinase
differentialExpressionMethod: edgeR
transcriptQuantificationMethod: bedtools multicov
multipleTestingAdjustmentMethod: Benjamini Hotchberg

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